|
Cutoff value
| |
CEU
|
YRI
|
CHB
|
|---|
| |
Without prior population information for Hapmap samples
|
|
0.9
|
PCA Scores
|
17520/16329/16325
|
64/62/55
|
740/721/719
|
|
0.8
|
PCA Scores
|
18016/17928/17928
|
175/165/159
|
773/768/767
|
|
0.7
|
PCA Scores
|
18171/18122/18122
|
266/263/260
|
799/796/796
|
| |
With prior population information for Hapmap samples
|
|
0.9
|
PCA Scores
|
17510/16329/16321
|
69/62/59
|
743/721/719
|
|
0.8
|
PCA Scores
|
18017/17928/17928
|
174/165/159
|
774/768/768
|
|
0.7
|
PCA Scores
|
18167/18122/18121
|
267/263/260
|
799/796/796
|
- Number in each cell indicates: No. assigned by structure/No. assigned by FastPop/No. common in both methods. Structure analysis was conducted with/without prior population information for Hapmap samples. Structure was run was run under admixture model. Parameter setting “BURNIN 10000 NUMREPS 1000 INFERALPHA 1 POPSPECIFICALMBDA 1”. Without prior population information, the running time is 21:16:00 and 23:30:00 for with prior population information
