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Table 3 The table shows the models selected for all methods and the five studied chromosomes for TIS recognition

From: Stepwise approach for combining many sources of evidence for site-recognition in genomic sequences

   

CE

AC

DM

OA

HS

OC

BT

Chrom.

Obj.

#

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

1

auROC

8

                                   
 

auPRC

29

       

X

    

X

    

X

         

X

    

X

  
 

G

2

                                   

3

auROC

8

                                   
 

auPRC

33

       

X

    

X

         

X

 

X

  

X

   

X

   
 

G

2

                                   

13

auROC

7

            

X

                      
 

auPRC

28

       

X

         

X

    

X

    

X

    

X

  
 

G

2

                                   

19

auROC

7

                                   
 

auPRC

27

                           

X

    

X

 

X

 

G

2

                                   

21

auROC

8

                                   
 

auPRC

31

       

X

                   

X

 

X

 

X

X

  
 

G

2

                                   
   

CJ

FA

EC

CLF

GG

MD

SM

Chrom.

Obj.

#

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

1

auROC

8

    

X

            

X

                 
 

auPRC

29

  

X

    

X

  

X

      

X

    

X

    

X

       
 

G

2

                                   

3

auROC

8

    

X

            

X

    

X

            
 

auPRC

33

  

X

 

X

  

X

    

X

    

X

    

X

       

X

    
 

G

2

                                   

13

auROC

7

              

X

  

X

                 
 

auPRC

28

  

X

 

X

  

X

    

X

    

X

    

X

       

X

    
 

G

2

                                   

19

auROC

7

                 

X

                 
 

auPRC

27

    

X

  

X

 

X

X

 

X

    

X

    

X

    

X

  

X

    
 

G

2

                                   

21

auROC

8

            

X

 

X

       

X

            
 

auPRC

31

 

X

X

 

X

  

X

  

X

 

X

 

X

  

X

    

X

    

X

  

X

    
 

G

2

                                   
   

MM

DR

MaM

TR

PT

SS

RN

Chrom.

Obj.

#

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

1

auROC

8

            

X

 

X

         

X

          
 

auPRC

29

 

X

X

 

X

      

X

X

      

X

 

X

X

           

X

 

G

2

              

X

         

X

          

3

auROC

8

              

X

         

X

          
 

auPRC

33

 

X

X

    

X

   

X

X

    

X

   

X

X

 

X

  

X

    

X

 

X

 

G

2

              

X

         

X

          

13

auROC

7

              

X

         

X

  

X

       
 

auPRC

28

       

X

   

X

X

 

X

  

X

 

X

 

X

            

X

 

G

2

              

X

                    

19

auROC

7

            

X

 

X

         

X

X

         
 

auPRC

27

  

X

 

X

  

X

   

X

     

X

 

X

      

X

X

    

X

  
 

G

2

              

X

         

X

          

21

auROC

8

              

X

         

X

          
 

auPRC

31

    

X

  

X

   

X

     

X

 

X

  

X

         

X

 

X

 

G

2

              

X

         

X

          
   

BT.RNA

DR.RNA

HS.RNA

MM.RNA

RN.RNA

SS.RNA

XT.RNA

Chrom.

Obj.

#

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

1

auROC

8

 

X

            

X

               

X

    
 

auPRC

29

  

X

 

X

  

X

    

X

         

X

    

X

 

X

X

 

X

  
 

G

2

                                   

3

auROC

8

              

X

      

X

        

X

    
 

auPRC

33

            

X

      

X

 

X

X

    

X

 

X

X

 

X

  
 

G

2

                                   

13

auROC

7

              

X

               

X

    
 

auPRC

28

  

X

         

X

 

X

       

X

    

X

 

X

X

 

X

  
 

G

2

              

X

                    

19

auROC

7

              

X

          

X

         
 

auPRC

27

  

X

    

X

    

X

 

X

       

X

    

X

 

X

  

X

  
 

G

2

                                   

21

auROC

8

           

X

  

X

               

X

    
 

auPRC

31

  

X

 

X

  

X

    

X

    

X

        

X

X

 

X

  

X

  
 

G

2

                                   
  1. S stands for stop codon method, C for C4.5, K for k-NN, P for PWM and W for a SVM with a WD string kernel