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Table 3 The table shows the models selected for all methods and the five studied chromosomes for TIS recognition

From: Stepwise approach for combining many sources of evidence for site-recognition in genomic sequences

    CE AC DM OA HS OC BT
Chrom. Obj. # S C K P W S C K P W S C K P W S C K P W S C K P W S C K P W S C K P W
1 auROC 8                                    
  auPRC 29         X      X      X           X      X   
  G 2                                    
3 auROC 8                                    
  auPRC 33         X      X           X   X    X     X    
  G 2                                    
13 auROC 7              X                       
  auPRC 28         X           X      X      X      X   
  G 2                                    
19 auROC 7                                    
  auPRC 27                             X      X   X
  G 2                                    
21 auROC 8                                    
  auPRC 31         X                     X   X   X X   
  G 2                                    
    CJ FA EC CLF GG MD SM
Chrom. Obj. # S C K P W S C K P W S C K P W S C K P W S C K P W S C K P W S C K P W
1 auROC 8      X              X                  
  auPRC 29    X      X    X        X      X      X        
  G 2                                    
3 auROC 8      X              X      X             
  auPRC 33    X   X    X      X      X      X         X     
  G 2                                    
13 auROC 7                X    X                  
  auPRC 28    X   X    X      X      X      X         X     
  G 2                                    
19 auROC 7                   X                  
  auPRC 27      X    X   X X   X      X      X      X    X     
  G 2                                    
21 auROC 8              X   X         X             
  auPRC 31   X X   X    X    X   X   X    X      X      X    X     
  G 2                                    
    MM DR MaM TR PT SS RN
Chrom. Obj. # S C K P W S C K P W S C K P W S C K P W S C K P W S C K P W S C K P W
1 auROC 8              X   X           X           
  auPRC 29   X X   X        X X        X   X X             X
  G 2                X           X           
3 auROC 8                X           X           
  auPRC 33   X X      X     X X      X     X X   X    X      X   X
  G 2                X           X           
13 auROC 7                X           X    X        
  auPRC 28         X     X X   X    X   X   X              X
  G 2                X                     
19 auROC 7              X   X           X X          
  auPRC 27    X   X    X     X       X   X        X X      X   
  G 2                X           X           
21 auROC 8                X           X           
  auPRC 31      X    X     X       X   X    X           X   X
  G 2                X           X           
    BT.RNA DR.RNA HS.RNA MM.RNA RN.RNA SS.RNA XT.RNA
Chrom. Obj. # S C K P W S C K P W S C K P W S C K P W S C K P W S C K P W S C K P W
1 auROC 8   X              X                 X     
  auPRC 29    X   X    X      X           X      X   X X   X   
  G 2                                    
3 auROC 8                X        X          X     
  auPRC 33              X        X   X X      X   X X   X   
  G 2                                    
13 auROC 7                X                 X     
  auPRC 28    X           X   X         X      X   X X   X   
  G 2                X                     
19 auROC 7                X            X          
  auPRC 27    X      X      X   X         X      X   X    X   
  G 2                                    
21 auROC 8             X    X                 X     
  auPRC 31    X   X    X      X      X          X X   X    X   
  G 2                                    
  1. S stands for stop codon method, C for C4.5, K for k-NN, P for PWM and W for a SVM with a WD string kernel