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Table 6 The table shows the models selected for all methods and the five studied chromosomes for stop codon recognition

From: Stepwise approach for combining many sources of evidence for site-recognition in genomic sequences

   

CE

AC

DM

OA

HS

OC

BT

Chrom.

Obj.

#

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

1

auROC

4

                                   
 

auPRC

22

                               

X

X

  
 

G

2

                                   

3

auROC

4

                                   
 

auPRC

10

                 

X

         

X

    

X

  
 

G

4

X

                                  

13

auROC

5

                                   
 

auPRC

20

                 

X

              

X

  
 

G

6

                                  

X

19

auROC

5

                                   
 

auPRC

15

                 

X

    

X

    

X

    

X

  
 

G

2

                                   

21

auROC

4

                                   
 

auPRC

18

                 

X

                 
 

G

2

                                   
   

CJ

FA

EC

CLF

GG

MD

SM

Chrom.

Obj.

#

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

1

auROC

4

                 

X

                 
 

auPRC

22

 

X

          

X

              

X

       
 

G

2

                                   

3

auROC

4

                 

X

                 
 

auPRC

10

                                   
 

G

4

    

X

         

X

                    

13

auROC

5

    

X

       

X

    

X

                 
 

auPRC

20

 

X

         

X

X

      

X

       

X

       
 

G

6

    

X

                              

19

auROC

5

    

X

       

X

                      
 

auPRC

15

 

X

X

         

X

                      
 

G

2

                                   

21

auROC

4

            

X

                      
 

auPRC

18

          

X

                        
 

G

2

                                   

0

  

MM

DR

MaM

TR

PT

SS

RN

Chrom.

Obj.

#

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

1

auROC

4

              

X

         

X

          
 

auPRC

22

    

X

      

X

X

 

X

  

X

 

X

 

X

     

X

  

X

    
 

G

2

              

X

         

X

          

3

auROC

4

              

X

         

X

          
 

auPRC

10

    

X

       

X

    

X

    

X

            
 

G

4

              

X

                    

13

auROC

5

              

X

         

X

          
 

auPRC

20

  

X

 

X

      

X

X

      

X

 

X

     

X

       
 

G

6

              

X

         

X

          

19

auROC

5

              

X

         

X

          
 

auPRC

15

  

X

 

X

              

X

               
 

G

2

              

X

         

X

          

21

auROC

4

              

X

         

X

          
 

auPRC

18

  

X

 

X

      

X

       

X

 

X

X

            
 

G

2

              

X

         

X

          
   

BT.RNA

DR.RNA

HS.RNA

MM.RNA

RN.RNA

SS.RNA

XT.RNA

Chrom.

Obj.

#

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

S

C

K

P

W

1

auROC

4

                         

X

         
 

auPRC

22

  

X

      

X

      

X

X

       

X

 

X

  

X

 

X

  
 

G

2

                                   

3

auROC

4

                         

X

         
 

auPRC

10

                         

X

 

X

  

X

    
 

G

4

                                   

13

auROC

5

                         

X

         
 

auPRC

20

       

X

 

X

     

X

         

X

    

X

    
 

G

6

                              

X

    

19

auROC

5

                              

X

    
 

auPRC

15

  

X

      

X

       

X

       

X

 

X

  

X

    
 

G

2

                                   

21

auROC

4

                         

X

         
 

auPRC

18

 

X

X

    

X

 

X

      

X

     

X

   

X

X

  

X

 

X

  
 

G

2

                                   
  1. S stands for stop codon method, C for C4.5, K for k-NN, P for PWM and W for a SVM with a WD string kernel
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