Assembly metrics | SOAP | SSPACE | SGA | BESST | OPERA_LG |
---|---|---|---|---|---|
Assembly size (bp) | 115 319 220 | 116 017 208 | 114 956 386 | 114 996 281 | 116 406 702 |
N50 (bp) | 821 817 | 982 887 | 284 070 | 1 299 606 | 1 272 891 |
L50 | 39 | 31 | 115 | 22 | 26 |
N75 (bp) | 306 051 | 340 070 | 118 727 | 643 037 | 566 836 |
L75 | 96 | 81 | 270 | 54 | 60 |
QUAST metrics | |||||
Number of N's per 100 kb | 3851.60 | 3000.11 | 4251.16 | 2845.19 | 3139.94 |
Misassemblies | 9 | 9 | 3 | 23 | 51 |
Largest alignment (bp) | 3 482 036 | 4 678 885 | 1 680 656 | 6 501 653 | 5 259 610 |
NA50 (bp) | 757 250 | 926 429 | 276 557 | 1 210 586 | 945 419 |
NA75 (bp) | 268 694 | 291 099 | 100 235 | 516 026 | 351 844 |
MaGuS metrics | |||||
An50 (bp) | 31 217 | 32 028 | 23 164 | 35 466 | 33 908 |
An75 (bp) | 11 887 | 12 052 | 6 981 | 14 315 | 13 113 |
R 2 | 0.99 | 0.98 | 0.96 | 0.99 | 0.96 |