Skip to main content

Table 1 QUAST and MaGuS quality metrics for the five assemblies. The R 2 values indicate the Pearson correlation coefficients between the QUAST NAx and MaGuS Anx values

From: MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data

Assembly metrics

SOAP

SSPACE

SGA

BESST

OPERA_LG

Assembly size (bp)

115 319 220

116 017 208

114 956 386

114 996 281

116 406 702

N50 (bp)

821 817

982 887

284 070

1 299 606

1 272 891

L50

39

31

115

22

26

N75 (bp)

306 051

340 070

118 727

643 037

566 836

L75

96

81

270

54

60

QUAST metrics

     

Number of N's per 100 kb

3851.60

3000.11

4251.16

2845.19

3139.94

Misassemblies

9

9

3

23

51

Largest alignment (bp)

3 482 036

4 678 885

1 680 656

6 501 653

5 259 610

NA50 (bp)

757 250

926 429

276 557

1 210 586

945 419

NA75 (bp)

268 694

291 099

100 235

516 026

351 844

MaGuS metrics

     

An50 (bp)

31 217

32 028

23 164

35 466

33 908

An75 (bp)

11 887

12 052

6 981

14 315

13 113

R 2

0.99

0.98

0.96

0.99

0.96