SOAP | SSPACE | SGA | BESST | OPERA-LG | |
---|---|---|---|---|---|
Assembly size (bp) | 115 563 956 | 116 414 299 | 115 703 449 | 115 174 685 | 116 556 828 |
N50 (bp) | 1 350 715 | 1 680 424 | 635 106 | 1 751 177 | 1 442 963 |
N50 fold change | 1.64 | 1.74 | 2.24 | 1.35 | 1.13 |
L50 | 23 | 18 | 47 | 18 | 22 |
N75 (bp) | 509 384 | 646 442 | 288 240 | 787 050 | 695 198 |
N75 fold change | 1.66 | 1.9 | 2.43 | 1.22 | 1.23 |
L75 | 58 | 48 | 110 | 42 | 51 |
Number of N's per 100 kb | 4 055.34 | 3 331.14 | 4 869.38 | 2 995.68 | 3 264.70 |
Largest alignment | 5 012 555 | 7 708 756 | 3 361 051 | 6 902 343 | 5 597 743 |
NA50 | 1 187 620 | 1 455 792 | 579 394 | 1 407 579 | 1 258 868 |
NA50 fold change | 1.57 | 1.57 | 2.1 | 1.16 | 1.18 |
NA75 | 354 088 | 508 625 | 215 751 | 609 320 | 560 902 |
NA75 fold change | 1.32 | 1.75 | 2.15 | 1.18 | 1.59 |
Total misassemblies | 23 | 19 | 19 | 36 | 62 |
Magus misassemblies | 14 | 10 | 16 | 13 | 5 |
Number of map-links | 534 | 481 | 1 034 | 371 | 368 |
Number of MP-validated links | 209 (39.14 %) | 214 (44.49 %) | 516 (49.9 %) | 93 (25.07 %) | 78 (21.2 %) |
Number of correct MP-validated links | 195 (36.51 %) | 204 (42.41 %) | 500 (48.53 %) | 80 (21.56 %) | 73 (19.83 %) |
False positive rate | 6.7 | 4.7 | 3.1 | 14 | 6.4 |