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Table 1 Summary of the bacterial DNA integration models

From: Modeling the integration of bacterial rRNA fragments into the human cancer genome

Name

Min JSD

JSD dist. bp

Integration site

Min. AD

AD dist. bp

Bacterial fragment

Human fragment

A_16S__C5

0.748

26

48–73

16

11–17

354–454

74–147

A_23S1_C5

0.776

22

51–72

4.33

33

1308–1385

73–145

A_23S2_C5

0.785

32

49–80

12.67

29

1626–1699

81–157

B_16S__C5

0.743

0

18

30.82

0

324–449

19–148

B_16Sa_C5

0.722

7

47–53

19.10

0–6

331–449

54–148

B_23S__C5

0.795

35

59–93

12

30–54

1626–1701

94–145

A_16S__C6

0.768

19

59–77

17.60

17

329–454

78–168

C_16S__C6

0.720

23

50–72

17.89

31

321–456

73–140

D_16S1_CD

0.802

2

180–187

27.50

0–20

563–708

188–278

D_16S2_CD

0.802

41

136–147

26.50

7–60

927–1022

184–241

D_23S__CD

0.815

22

167–195

166.75

0

892–1323

196–306

E_16S1_CD

0.809

48

163–205

46

0–65

589–697

206–290

E_23S1_CD

0.791

31

201–225

0.50

44–45

907–978

226–296

E_23S2_CD

0.782

28

170–191

29

0–38

1255–1379

192–269

F_16S_T10

0.812

19

(−5)–13

169.44

0

701–927

14–196

  1. Names indicate the participant with letters A through F, their respective rRNA gene integration (16S, 23S), and the human gene it has integrated into (C5 = CEACAM5, C6 = CEACAM6, CD = CD74, T10 = TMSB10)