From: Modeling the integration of bacterial rRNA fragments into the human cancer genome
References | %GC of human fragment consensus sequences | %GC of bacterial fragment consensus sequences | %AG of human fragment consensus sequences | %AG of bacterial fragment consensus sequences |
---|---|---|---|---|
p-value | p-value | p-value | p-value | |
Human fragment consensus sequences | NA | 9.5e-04* | NA | 1.5e-01 |
Bacterial fragment consensus sequences | 9.5e-04* | NA | 0.15 | NA |
Pseudomonas 16S rRNA genes | 8.3e-06* | 7.7e-02 | 1.0 | 8.4e-08* |
Pseudomonas 23S rRNA genes | 2.2e-10* | 1.0 | 1.0 | 5.3e-09* |
Pseudomonas genomes | 6.4e-05* | 7.2e-08* | NA | NA |
Human genome | 6.8e-09* | 1.2e-06* | NA | NA |
Human transcriptome | 8.0e-06* | 1.8e-02 | 1.0 | 7.3e-02 |
Human transcriptome first 150 bp | 5.7e-05* | 5.2e-02 | 1.0 | 1.0 |
Human genes with integrations | 8.1e-01 | 1.0 | 0.64 | 7.8e-02 |
Human genes with integrations first 150 bp | 1.0 | 6.3e-02 | 1.0 | 2.6e-01 |
Expressed human transcripts | 2.9e-03* | 1.0 | 1.7e-3* | 2.0e-09* |
Q1 Expressed human transcripts | 1.2e-02 | 3.5e-01 | 7.3-e4* | 1.4e-09* |
Q2 Expressed human transcripts | 8.0e-03 | 6.4e-01 | 1.1e-3* | 1.7e-09* |
Q3 Expressed human transcripts | 2.1e-03* | 6.1e-01 | 2.5e-3* | 2.2e-09* |
Q4 Expressed human transcripts | 2.7e-04* | 2.4e-01 | 4.4e-4* | 3.4e-09* |
Expressed human transcripts first 150 bp | 1.0 | 4.3e-01 | 3.7e-2 | 4.6e-07* |
Q1 Expressed human transcripts first 150 bp | 1.0 | 3.5e-01 | 1.7e-2 | 1.3e-07* |
Q2 Expressed human transcripts first 150 bp | 1.0 | 6.4e-01 | 2.8e-2 | 3.3e-07* |
Q3 Expressed human transcripts first 150 bp | 1.0 | 6.1e-01 | 7.6e-2 | 1.0e-06* |
Q4 Expressed human transcripts first 150 bp | 1.0 | 2.4e-01 | 4.6e-2 | 9.7e-07* |