Sparse regression models for unraveling group and individual associations in eQTL mapping

BMC Bioinformatics

Table 2 Pairwise comparison of different models using cis-enrichment and trans-enrichment

		FaST-LMM	geQTL-ridge	SET-eQTL	MTLasso2G	LORS	Matrix eQTL	Lasso
cis	geQTL ⁺	<0.0163	0.0124	<0.0001	<0.0001	<0.0001	<0.0001	<0.0001
	FaST-LMM	-	0.0247	<0.0001	<0.0001	<0.0001	<0.0001	<0.0001
	geQTL-ridge	-	-	<0.0001	<0.0001	<0.0001	<0.0001	<0.0001
	SET-eQTL	-	-	-	0.0117	<0.0001	<0.0001	<0.0001
	MTLasso2G	-	-	-	-	<0.0001	<0.0001	<0.0001
	LORS	-	-	-	-	-	<0.0001	0.0052
	Matrix eQTL	-	-	-	-	-	-	0.0134
		MTLasso2G	FaST-LMM	LORS	SET-eQTL	Matrix eQTL	Lasso	geQTL-ridge
trans	geQTL ⁺	0.0042	0.0040	0.0033	0.0029	0.0027	0.0022	0.0001
	MTLasso2G	-	0.0212	0.0134	0.0049	0.0042	0.0038	0.0005
	FaST-LMM	-	-	0.0233	0.0178	0.0125	0.0073	0.0006
	LORS	-	-	-	0.3110	0.1103	0.0151	0.0008
	SET-eQTL	-	-	-	-	0.1223	0.0578	0.0016
	Matrix eQTL	-	-	-	-	-	0.0672	0.0021
	Lasso	-	-	-	-	-	-	0.0025

ISSN: 1471-2105