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Fig. 2 | BMC Bioinformatics

Fig. 2

From: MutSpec: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes

Fig. 2

Mutation spectra in OSCC from Indian patients. Results for the pool of 106 samples are shown. a Distribution of variants (Nā€‰=ā€‰13059) according to their functional impact on protein sequences. b Stranded analysis of the 6 types of SBS showing counts for SBS with transcript annotations (Nā€‰=ā€‰12789). c Distribution of SBS according to their trinucleotide sequence context (SBS counts are indicated in parenthesis). d Plots of the cophenic and rss analyses using a range of factorisation values (2 to 8). The solid lines represent the results obtained with the original data while the dotted lines represent the results obtained with randomized data (original data are shuffled)

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