Skip to main content

Table 3 Analyses performed by the tool MutSpec-Stat

From: MutSpec: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes

Analysis Table Graph Statistics
Overall mutation distribution - X -
Impact on protein sequence X X -
SBS type distribution X X -
Stranded analysis of SBS type distribution X X Chi-squared test
SBS distribution by functional region X - -
Strand bias by functional region X - -
SBS distribution per chromosome X - Pearson Correlation
Trinucleotide sequence context of SBS on the genomic sequence X X -
Stranded analysis of trinucleotide sequence context of SBS X X -