Fig. 11
From: Identifying peaks in *-seq data using shape information
Assigning scores to validated regions. Two nearby regions, which are part of the gold standard, were annotated as positive (cyan) and negative (orange), respectively. Two methods for assigning scores are shown. 1) CLC Peak Caller: The result of the peak calling is a single peak (purple bar) overlapping the region validated positive and the score associated with it is the maximum score within the peak, i.e. 10.85. No peaks overlapping with the negative were found so no score will be assigned to the negative region. 2) CLC Peak Shape Score: The Peak Shape Score values within the positive and negative regions are extracted and the maximum values are used as score for the region. Note that this procedure always assigns a score to every region in the gold standard