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Table 3 Candidate biomarkers detected by the two complementary methods, WGCNA and BioSignature Discoverer

From: Network and biosignature analysis for the integration of transcriptomic and metabolomic data to characterize leaf senescence process in sunflower

WGCNA

Biosignatures

Sunflower ID

Arabidopsis ID

TF Family

Sunflower ID

Arabidopsis ID

TF Family

HeAn_C_10816

AT1G52890

NAC

HeAn_S_15792

AT5G26210

Alfin-like

HeAn_S_17894

AT5G55580

mTERF

HeAn_C_10939

AT1G50640

AP2

HeAn_C_3510

AT4G27410

NAC

HeAn_S_38523

AT3G16770

AP2

HeAn_S_30904

AT4G17810

C2H2

HeAn_C_9238

AT2G39770

GRAS

HeAn_C_3774

AT4G02590

bHLH

HeAn_S_32569

AT5G49620

MYB

HeAn_C_11953

AT2G45650

MADS

HeAn_C_11118

AT1G69490

NAC

HeAn_S_36498

AT2G30400

OFP

Alanine

  

HeAn_C_10939

AT1G50640

AP2

   

HeAn_C_1262

AT1G64860

Sigma70-like

   

HeAn_C_8818

AT2G28810

C2C2-Dof

   

HeAn_C_11118

AT1G69490

NAC

   

HeAn_C_12238

AT1G27320

Orphans

   

HeAn_S_32569

AT5G49620

MYB

   

Succinic_acid

     

Malonic_acid

     

Raffinose

     

Xylose

     

Talose

     

Inositol_myo

     

Glucoheptose

     

Malic_acid

     

Galactinol

     

Sorbose

     
  1. Biomarkers from WGCNA were selected based on their degree (higher than 20) and biomarkers from BioSignature Discoverer correspond to the analysis of the integrated list. Biomarkers detected independently in the two methods are in bold