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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Reduction, alignment and visualisation of large diverse sequence families

Fig. 3

SAM-III riboswitch RNA family. The family reduced from over 400 sequences is depicted as for the protein examples above but with the exception that the predicted stem-loops are coloured green when descending into a hairpin and red when ascending. The nucleotide colours are: red, green, yellow, blue for G,A,C,T respectively. (N.b., Uracil is recoded as ‘T’ to retain the 20-letter amino acid alphabet)

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