Skip to main content

Table 5 Summary of the two datasets analyzed in the case studies

From: A gene-signature progression approach to identifying candidate small-molecule cancer therapeutics with connectivity mapping

Dataset

GSE19804

GSE15852

Disease

Lung cancer

Breast cancer

Samples Size

120

86

Samples Details

60 tumors

43 tumors

 

60 normals

43 normals

Total Genes (Probesets)

22277

22283

Threshold P-value

1/22277

1/22283

Significant Genes

6316

1241

Expression filtered

6066

1229

Differential expression Filtered (Fold Change > 2)

1779

368

Gene Signature Progression optimal length

322

232

Potential drugs

10

10