Table 2 Adapter trimming benchmark results on real data (mapping)
From: SeqPurge: highly-sensitive adapter trimming for paired-end NGS data
Reads paired | Bases overtrimmed | Bases undertrimmed | |
|---|---|---|---|
no trimming | 1022388 | 0 | 21918793 |
SeqPurge 0.1-270 | 1021315 | 1736 | 33650 |
AdapterRemoval 1.5.4 | 1021290 | 25 | 223997 |
Flexbar 2.5 | 1021224 | 4539534 | 62901 |
PEAT 1.2.2 | 1022901 | 69296 | 354531 |
SeqPrep 1.2 | 1018828 | 53 | 34949 |
Skewer 0.1.123 | 1021323 | 238 | 95279 |
Trimmomatic 0.32 | 1021316 | 1580 | 190062 |