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Table 2 Adapter trimming benchmark results on real data (mapping)

From: SeqPurge: highly-sensitive adapter trimming for paired-end NGS data

  Reads paired Bases overtrimmed Bases undertrimmed
no trimming 1022388 0 21918793
SeqPurge 0.1-270 1021315 1736 33650
AdapterRemoval 1.5.4 1021290 25 223997
Flexbar 2.5 1021224 4539534 62901
PEAT 1.2.2 1022901 69296 354531
SeqPrep 1.2 1018828 53 34949
Skewer 0.1.123 1021323 238 95279
Trimmomatic 0.32 1021316 1580 190062
  1. Benchmark results after mapping: properly-paired reads, erroneously trimmed insert bases, untrimmed adapter bases. The most notable entries are highlighted (bold)