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Table 3 Adapter trimming benchmark results on real data (variant calling)

From: SeqPurge: highly-sensitive adapter trimming for paired-end NGS data

  Variants Uncalled TPs Called FPs
no trimming 178 1 24
SeqPurge 0.1-270 155 0 0
AdapterRemoval 1.5.4 155 0 0
Flexbar 2.5 174 0 19
PEAT 1.2.2 155 0 0
SeqPrep 1.2 155 0 0
Skewer 0.1.123 155 0 0
Trimmomatic 0.32 178 0 23
  1. Benchmark results after variant calling: overall variant count, number of true-positive variants that were not called, number of false-positive variants that were called. The most notable entries are highlighted (bold)