Table 5 Trimming benchmark results on simulated data without errors
From: SeqPurge: highly-sensitive adapter trimming for paired-end NGS data
Time [s] | Bases overtrimmed | Bases undertrimmed | |
|---|---|---|---|
SeqPurge 0.1-270 | 224 | 14488 | 0 |
AdapterRemoval 1.5.4 | 1712 | 434 | 0 |
Flexbar 2.5 | 837 | 2842491 | 221979 |
PEAT 1.2.2 | 342 | 2701634 | 70617998 |
SeqPrep 1.2 | 1158 | 1848 | 0 |
Skewer 0.1.123 | 185 | 16 | 0 |
Trimmomatic 0.32 | 348 | 0 | 2225766 |