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Table 4 Numbers of non-redundant cross-linked peptides identified by ProteinProspector, Kojak, and ECL, respectively. The database contains 5200 proteins

From: ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database

Data set ProteinProspector Kojak ECL
1 20 (15) 5 (0) 36
2 32 (16) 6 (0) 39
3 24 (12) 4 (0) 39
4 23 (17) 2 (0) 57
  1. Values in the brackets are the numbers of overlapping cross-linked peptides identified by both ECL and the corresponding method. There is no result for intra-protein cross-linked peptides reported by Kojak because Percolator outputs errors in estimating q-value