Fig. 3From: RNA motif search with data-driven element orderingComputation of the search domain for a single-stranded element s3. Here we have a partly matched motif composed of five single-stranded elements s1,…,s5. Assume that elements s1 and s5 have already been matched. The match of s3 has to start in the left green interval and end in the right green interval, and it has to completely cover the red interval in the middleBack to article page