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Table 2 A few of the clusters in the Collins network with the lowest p-values with GO components

From: Protein complexes predictions within protein interaction networks using genetic algorithms

#

Size

GO-ID

GO-Term

p-value

N%

1

17

GO:0030880

RNA polymerase complex

3.30986E-39

100.0 %

2

8

GO:0044428

Nuclear part

3.70274E-05

100.0 %

3

7

GO:0030126

COPI vesicle coat

1.37069E-21

100.0 %

4

14

GO:0044428

Nuclear part

7.23152E-10

100.0 %

5

27

GO:0005739

Mitochondrion

9.82318E-22

100.0 %

7

18

GO:0000502

Proteasome complex

1.76807E-40

100.0 %

8

12

GO:0005634

Nucleus

3.90352E-06

100.0 %

9

7

GO:0030008

TRAPP complex

1.02802E-20

100.0 %

11

21

GO:0005634

Nucleus

2.04087E-10

100.0 %

12

10

GO:0044425

Membrane part

4.18992E-10

100.0 %

13

5

GO:0035097

Histone methyl–transferase complex

1.31389E-11

100.0 %

14

5

GO:0030126

COPI vesicle coat

1.18247E-14

100.0 %

15

9

GO:0016585

Chromatin remodeling complex

2.37606E-17

100.0 %

16

15

GO:0000502

Proteasome complex

2.20275E-33

100.0 %

17

13

GO:0043189

Histone acetyl–transferase complex

1.21627E-39

100.0 %

20

12

GO:0016514

SWI/SNF complex

4.98150E-37

100.0 %

21

60

GO:0005634

Nucleus

2.15384E-32

100.0 %

22

81

GO:0043227

Membrane-bound organelle

4.87516E-23

100.0 %

24

63

GO:0044464

Cell part

3.42642E-05

98.4 %

23

4

GO:0031011

INO80 complex

4.13601E-07

75.0 %

  1. The GO component that has the lowest p-value with these clusters is listed, the number of proteins in the cluster that overlap with the GO component are listed as percentages of the number of proteins in the cluster (N%). p-values defined in the text are also shown