From: OMWare: a tool for efficient assembly of genome-wide physical maps
Assembly step | Sort | Split | Pairwise alignment | Assembly | Total |
---|---|---|---|---|---|
Applicable parameters | Minimum lengtha, minimum labelsa | Minimum lengtha, minimum labelsa | Minimum lengtha, minimum labelsa, significance thresholda, false positive, false negative | Minimum length, minimum sites, significance threshold, false positive, false negative | Minimum length, minimum sites, significance threshold, false positive, false negative |
Steps run | 1 | 1 | 9 | 405 | - |
Parallel jobs per step | 1 | 3 | 1,250 | 1 | - |
Minutes elapsed | 1 | 6 | 3,442,500 | 105,614 | 3,548,121 |
Predictedb minutes | 405 | 2,733 | 154,912,500 | 105,614 | 155,021,252 |
Megabytes RAM used | 1 | 5,667 | 176,321,250 | 1,130,838,484 | 1,307,165,402 |
Predictedb megabytes | 405 | 2,295,135 | 7,934,456,000 | 1,130,838,484 | 9,067,590,024 |
Megabytes disk space used | 580 | 580 | 4,640,000 | 51,874 | 4,693,034 |
Predictedb megabytes | 2,900 | 2,900 | 208,800,000 | 51,874 | 209,089,674 |