A method for predicting protein complex in dynamic PPI networks

BMC Bioinformatics

Table 4 The effect of Complex_thresh on protein complex prediction performance on DPN_MIPS

Complex_thresh	#Complexes	P	R	F	Sn	PPV	Acc
0	1895	0.239	0.681	0.353	0.413	0.608	0.501
0.1	1145	0.274	0.576	0.372	0.382	0.61	0.483
0.2	611	0.327	0.404	0.361	0.313	0.634	0.446
0.3	321	0.364	0.26	0.303	0.224	0.644	0.38
0.4	192	0.396	0.174	0.242	0.141	0.633	0.299
0.5	101	0.426	0.11	0.175	0.089	0.642	0.239
0.6	57	0.439	0.061	0.108	0.046	0.726	0.182
0.7	23	0.348	0.02	0.037	0.016	0.73	0.109
0.8	13	0.231	0.005	0.01	0.003	1	0.05
0.9	11	0.182	0.005	0.01	0.003	1	0.06
1	0	-	-	-	-	-	-

F: F-score, P: precision, R: recall. The highest score of each row is shown in bold

ISSN: 1471-2105