From: A method for predicting protein complex in dynamic PPI networks
PPI data | Methods | #Complexes | P | R | F | Sn | PPV | Acc |
---|---|---|---|---|---|---|---|---|
Gavin data | Our method | 447 | 0.662 | 0.434 | 0.524 | 0.413 | 0.617 | 0.505 |
CSO | 174 | 0.645 | 0.302 | 0.411 | 0.476 | 0.534 | 0.503 | |
Cluster ONE | 243 | 0.502 | 0.324 | 0.393 | 0.46 | 0.597 | 0.524 | |
COACH | 326 | 0.525 | 0.331 | 0.406 | 0.44 | 0.547 | 0.49 | |
CMC | 120 | 0.608 | 0.218 | 0.321 | 0.371 | 0.606 | 0.474 | |
HUNTER | 69 | 0.87 | 0.206 | 0.333 | 0.386 | 0.508 | 0.443 | |
MCODE | 66 | 0.727 | 0.142 | 0.238 | 0.277 | 0.513 | 0.377 | |
Krogan data | Our method | 816 | 0.464 | 0.591 | 0.52 | 0.448 | 0.677 | 0.551 |
CSO | 190 | 0.726 | 0.331 | 0.455 | 0.411 | 0.642 | 0.514 | |
Cluster ONE | 240 | 0.579 | 0.328 | 0.419 | 0.398 | 0.681 | 0.521 | |
COACH | 345 | 0.617 | 0.343 | 0.441 | 0.432 | 0.544 | 0.485 | |
CMC | 111 | 0.748 | 0.235 | 0.358 | 0.381 | 0.589 | 0.474 | |
HUNTER | 74 | 0.865 | 0.199 | 0.323 | 0.374 | 0.569 | 0.462 | |
MCODE | 76 | 0.724 | 0.157 | 0.258 | 0.255 | 0.583 | 0.385 | |
MIPS data | Our method | 1145 | 0.274 | 0.576 | 0.372 | 0.382 | 0.61 | 0.483 |
CSO | 192 | 0.495 | 0.289 | 0.365 | 0.286 | 0.568 | 0.403 | |
Cluster ONE | 256 | 0.359 | 0.23 | 0.281 | 0.243 | 0.668 | 0.403 | |
COACH | 448 | 0.301 | 0.289 | 0.295 | 0.336 | 0.311 | 0.323 | |
CMC | 168 | 0.429 | 0.211 | 0.283 | 0.389 | 0.318 | 0.352 | |
HUNTER | 52 | 0.654 | 0.11 | 0.189 | 0.296 | 0.286 | 0.291 | |
MCODE | 85 | 0.447 | 0.115 | 0.183 | 0.19 | 0.503 | 0.309 | |
STRING data | Our method | 1240 | 0.324 | 0.586 | 0.417 | 0.836 | 0.404 | 0.581 |
Cluster ONE | 893 | 0.151 | 0.245 | 0.187 | 0.846 | 0.459 | 0.623 | |
COACH | 1645 | 0.186 | 0.292 | 0.227 | 0.955 | 0.12 | 0.338 | |
HUNTER | 5 | 0.5 | 0.01 | 0.019 | 0.104 | 0.298 | 0.176 | |
MCODE | 393 | 0.092 | 0.09 | 0.091 | 0.675 | 0.242 | 0.405 |