Skip to main content

Table 1 CDBG used in this study

From: Read mapping on de Bruijn graphs

CDBG Id

Reads Id

k

c

Number of unitigs

Mean length of unitigs

E.coli

SRR959239

31

3

42,843

134

C.elegans_norm

SRR065390

31

3

1,627,335

93

C.elegans_cpx

SRR065390

21

2

8,273,338

34

Human

SRR345593

31

10

69,932,343

70

 

SRR345594

    
  1. C.elegans_cpx and C.elegans_norm are two distinct graphs, constructed using the same read set from C.elegans genome. The suffixes norm and cpx respectively stand for “normal” (using c=3 and k=31) and for “complex” (using a low threshold c=2 and small value k=21)