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Table 1 A sample DataSet

From: SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis

Name

Read [File]

Species

Genotype [Factor]

Mut1

P1001/ventricles/mut1_R1.fastq.gz

Mus musculus

Mutant

Mut2

P1001/ventricles/mut2_R1.fastq.gz

Mus musculus

Mutant

Wt1

P1001/ventricles/wt1_R1.fastq.gz

Mus musculus

Wildtype

Wt2

P1001/ventricles/wt2_R1.fastq.gz

Mus musculus

Wildtype

  1. Example of a sequencing read DataSet where a subset of the meta-information is shown as annotation columns. The DataSet includes four samples with four categories of meta-information, 1. Name, 2. Read, 3. Species, and 4. Genotype. Each column header can have a tag. E.g. [File] means the column holds file locations, and [Factor] means the values represent an experimental factor. The DataSet object is implemented as an Array of Hash objects in the SUSHI system and it can be imported from or exported to tab-separated-value file