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Fig. 6 | BMC Bioinformatics

Fig. 6

From: SCOUP: a probabilistic model based on the Ornstein–Uhlenbeck process to analyze single-cell expression data during differentiation

Fig. 6

PCA of cells of Moignard’s data based on gene expression. The cell colors represent the genuine lineage (left), lineage estimated with SCOUP (middle), and lineage estimated with Monocle (right). The color for the genuine lineage is defined by the annotation of the cell; yellow, HF; red, 4SG; and purple, 4SFG. The color for the SCOUP analysis is defined by γ c0; black, 0.5; red, 0.0; and blue, 1.0. The color for the Monocle analysis is defined by estimated states; black, state 1 (pre-bifurcation); red, state 2; and blue, state 3. We determined the color of each state to be consistent among each plot

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