Table 4 The comparison of prediction performance between RNAProSite and other excellent sequence-based and structure-based methods on RBP68 (RBP42)
From: Accurate prediction of RNA-binding protein residues with two discriminative structural descriptors
Methods | SN | SP | PPV | ACC | F-score | MCC |
|---|---|---|---|---|---|---|
BindN (sn) | 0.606 (0.600) | 0.412 (0.417) | 0.163 (0.093) | 0.443 (0.433) | 0.257 (0.160) | 0.014 (0.009) |
BindN (sp) | 0.366 (0.388) | 0.659 (0.667) | 0.169 (0.1036) | 0.613 (0.642) | 0.231 (0.164) | 0.019 (0.033) |
Pprint | 0.690 (0.673) | 0.800 (0.780) | 0.394 (0.233) | 0.782 (0.770) | 0.502 (0.346) | 0.400 (0.296) |
RNABindR | 0.774 (0.805) | 0.734 (0.728) | 0.351 (0.227) | 0.740 (0.735) | 0.483 (0.354) | 0.388 (0.327) |
KYG | 0.550 (0.605) | 0.813 (0.793) | 0.357 (0.225) | 0.771 (0.776) | 0.432 (0.328) | 0.308 (0.266) |
aaRNA | 0.645 (0.695) | 0.882 (0.863) | 0.510 (0.335) | 0.845 (0.848) | 0.569 (0.452) | 0.481 (0.410) |
PRNA | 0.617 (0.592) | 0.719 (0.673) | 0.294 (0.255) | 0.703 (0.660) | 0.398 (0.356) | 0.261 (0.201) |
RBScore | 0.741 (0.675) | 0.876 (0.860) | 0.530 (0.476) | 0.854 (0.830) | 0.618 (0.558) | 0.542 (0.468) |
RNAProSite | 0.707 (0.665) | 0.900 (0.914) | 0.606 (0.434) | 0.868 (0.892) | 0.631 (0.525) | 0.557 (0.481) |