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Table 2 Exclusively enriched GO terms using identified DE genes in the embryonic stem cells study

From: multiDE: a dimension reduced model based statistical method for differential expression analysis using RNA-sequencing data with multiple treatment conditions

 

GO code1

GO term description

P-value2

multiDE

GO:0030163 [BP]

Protein catabolic process

1.72e-04

 

GO:0044257 [BP]

Cellular protein catabolic

5.60e-04

  

process

 
 

GO:0005829 [CC]

Cytosol

4.00e-03

 

GO:0030530 [CC]

Nuclear ribonucleoprotein

6.16e-03

  

complex

 
 

GO:0019787 [MF]

Small conjugating protein

2.71e-02

  

ligase activity

 
 

GO:0031967 [CC]

Organelle envelope

4.32e-02

edgeR

GO:0010468 [BP]

Regulation of gene expression

1.29e-03

 

GO:0022618 [BP]

Ribonucleoprotein complex

1.27e-02

  

assembly

 
 

GO:0044452 [CC]

Nucleolar part

1.61e-02

 

GO:0006413 [BP]

Translational initiation

4.86e-02

DESeq2

GO:0000279 [BP]

M phase

1.31e-04

 

GO:0005819 [CC]

spindle

3.70e-04

 

GO:0030880 [CC]

RNA polymerase complex

2.07e-03

 

GO:0006259 [BP]

DNA metabolic process

2.83e-03

  1. 1[BP], biological process ontology; [CC], cellular component ontology; [MF], molecular function ontology.
  2. 2Bonferroni adjusted p-value