Skip to main content
Fig. 2 | BMC Bioinformatics

Fig. 2

From: GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly

Fig. 2

Running time of GRASPx. Running time evaluated by searching the 198 D. sp. CBDB1 Amophora2 marker genes against DS1. a Total indexing time of GRASP and GRASPx on simulated data sets that were randomly sampled from DS1 with various sizes. b Total runtime of GRASPx and GRASP (numbers above bars indicate speedups) when run with the corresponding number of threads. c GRASPx’s runtime (single-threaded) for searching a single protein sequence SGO_0049 (344 aa) against simulated data sets that were randomly sampled from DS1 with various sizes. d GRASPx’s runtime (single-threaded) for searching Amphora2 marker genes against DS1

Back to article page