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Table 3 Average SP and TC scores on BAliBASE

From: PnpProbs: a better multiple sequence alignment tool by better handling of guide trees

  ALL RV11 RV12 Time
  SP TC SP TC SP TC mm:ss
PnpProbs 82.80 68.00 68.91 45.73 94.79 87.23 3:22
GLProbs 83.20 67.59 69.72 44.68 94.84 87.38 4:05
MSAProbs 82.35 66.83 68.13 44.02 94.63 86.52 3:02
Probalign 82.53 67.27 69.50 45.34 94.63 86.20 1:47
CONTRAlign 77.59 58.10 61.78 35.60 91.23 77.52 6:37
ProbCons 81.55 65.22 66.99 41.68 94.12 85.54 1:41
MUSCLE 75.60 58.27 57.15 32.06 91.53 80.89 0:37
MAFFT 72.46 52.58 52.96 26.19 89.30 75.38 0:14
T-Coffee 80.82 64.93 65.63 41.36 93.94 85.29 5:18
Clustal Ω 75.96 59.38 59.01 36.21 90.60 79.38 0:21
ClustalW 69.63 49.21 50.06 22.99 86.52 71.84 0:21
PicXAA 81.33 66.08 66.56 44.06 93.47 84.19 3:26
DIALIGN 68.63 48.22 49.72 26.81 84.18 65.81 1:34
Align-m 71.45 56.04 51.88 33.06 88.36 75.88 7:09
  1. The best and second best results in each column are marked in bold and with *, respectively