Table 3 Average SP and TC scores on BAliBASE
From: PnpProbs: a better multiple sequence alignment tool by better handling of guide trees
ALL | RV11 | RV12 | Time | ||||
|---|---|---|---|---|---|---|---|
SP | TC | SP | TC | SP | TC | mm:ss | |
PnpProbs | 82.80 ∗ | 68.00 | 68.91 | 45.73 | 94.79 ∗ | 87.23 ∗ | 3:22 |
GLProbs | 83.20 | 67.59 ∗ | 69.72 | 44.68 | 94.84 | 87.38 | 4:05 |
MSAProbs | 82.35 | 66.83 | 68.13 | 44.02 | 94.63 | 86.52 | 3:02 |
Probalign | 82.53 | 67.27 | 69.50 ∗ | 45.34 ∗ | 94.63 | 86.20 | 1:47 |
CONTRAlign | 77.59 | 58.10 | 61.78 | 35.60 | 91.23 | 77.52 | 6:37 |
ProbCons | 81.55 | 65.22 | 66.99 | 41.68 | 94.12 | 85.54 | 1:41 |
MUSCLE | 75.60 | 58.27 | 57.15 | 32.06 | 91.53 | 80.89 | 0:37 |
MAFFT | 72.46 | 52.58 | 52.96 | 26.19 | 89.30 | 75.38 | 0:14 |
T-Coffee | 80.82 | 64.93 | 65.63 | 41.36 | 93.94 | 85.29 | 5:18 |
Clustal Ω | 75.96 | 59.38 | 59.01 | 36.21 | 90.60 | 79.38 | 0:21 |
ClustalW | 69.63 | 49.21 | 50.06 | 22.99 | 86.52 | 71.84 | 0:21 |
PicXAA | 81.33 | 66.08 | 66.56 | 44.06 | 93.47 | 84.19 | 3:26 |
DIALIGN | 68.63 | 48.22 | 49.72 | 26.81 | 84.18 | 65.81 | 1:34 |
Align-m | 71.45 | 56.04 | 51.88 | 33.06 | 88.36 | 75.88 | 7:09 |