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Fig. 1 | BMC Bioinformatics

Fig. 1

From: Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis

Fig. 1

Conceptual diagram of overall project components. Components and relationships for a full analysis of a ChIP-seq dataset. These steps are present in the full workflow. It is provided in Kepler and R script versions (R script version does not have read mapping) and each component is also implemented individually as separate Kepler workflows and R scripts. Names in parentheses refer to critical external, stand-alone programs (e.g., bowtie, MACS, ngsplot, MEME). Most components use R and Bioconductor packages. Some minor steps in the full pipeline (e.g., file conversion), accessory and other utility workflows are not displayed

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BMC Bioinformatics

ISSN: 1471-2105

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