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Table 1 Identified transcripts and peptides at different numbers of input reads for Trinity

From: PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq

No. of reads No. of transcripts (>200 bp) No. of identified peptides (FDR <= 1 %)
5,602,829 56,809 65,841
12,568,426 99,797 68,473
28,886,097 174,587 69,038
47,136,664 233,256 68,900
81,871,805 305,653 68,236