Table 1 Iterative inference of DREAM4 100-gene gold-standard GRN using TRaCE and TRaCE+ (w cut  = 0 and w cut  = 0.3): Number of iterations and maximum number of genes in KO experiments
Gold-standard Network | TRaCE | TRaCE+ (w cut  = 0) | TRaCE+ (w cut  = 0.3) | |||
|---|---|---|---|---|---|---|
Iterations | Max KO | Iterations | Max KO | Iterations | Max KO | |
1 | 34 | 3 | 31 | 3 | 27 | 4 |
2 | 21 | 2 | 18 | 2 | 17 | 2 |
3 | 55 | 3 | 49 | 3 | 51 | 3 |
4 | 80 | 3 | 70 | 3 | 68 | 4 |
5 | 54 | 3 | 56 | 3 | 54 | 3 |