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Fig. 8 | BMC Bioinformatics

Fig. 8

From: A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies

Fig. 8

Benchmarking of the ortholog prediction phase for DeNoGAP by comparison of predicted ortholog pairs in a reference proteome from 19 bacterial species derived by the Quest for Ortholog project. a Venn diagram showing a comparison of ortholog pairs predicted by DeNoGAP, OrthoMCL, RSD and Ensembl-Compara methods. b A cluster analysis of orthologs predicted by the four methods based on differences in their phylogenetic profiles (binary vectors generated for each method indicating the presence or absence of each ortholog in a combined ortholog set)

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