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Table 2 Twenty most abundantly represented species by 30 basepair fragments in Genbank

From: Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations

 

Total

Unique

Species

Sequences

Base Pairs

%

Sequences

Base Pairs

%

Homo sapiens

2.76 × 108

8.29 × 109

7.99

2.67 × 108

8.00 × 109

8.13

Mus musculus

2.03 × 108

6.10 × 109

5.88

2.02 × 108

6.05 × 109

6.14

Rattus norvegicus

1.55 × 108

4.66 × 109

4.49

1.54 × 108

4.62 × 109

4.69

Bos Taurus

1.26 × 108

3.78 × 109

3.65

1.24 × 108

3.72 × 109

3.78

Sus scrofa

1.23 × 108

3.70 × 109

3.56

1.23 × 108

3.68 × 109

3.74

Zea mays

1.02 × 108

3.07 × 109

2.96

1.02 × 108

3.06 × 109

3.11

Danio rerio

6.56 × 107

1.97 × 109

1.90

6.54 × 107

1.96 × 109

1.99

Hordeum vulgare

6.45 × 107

1.93 × 109

1.86

6.40 × 107

1.92 × 109

1.95

Ovis canadensis

5.80 × 107

1.74 × 109

1.68

5.62 × 107

1.68 × 109

1.71

Cyprinus carpio

5.50 × 107

1.65 × 109

1.59

5.49 × 107

1.65 × 109

1.67

Solanum lycopersicum

4.59 × 107

1.38 × 109

1.33

4.47 × 107

1.34 × 109

1.36

Apteryx australis

4.51 × 107

1.35 × 109

1.30

4.50 × 107

1.35 × 109

1.37

Strongylocentrotus purpuratus

3.76 × 107

1.13 × 109

1.09

3.74 × 107

1.12 × 109

1.14

Spirometra erinaceieuropaei

3.57 × 107

1.07 × 109

1.03

3.56 × 107

1.07 × 109

1.09

Pan troglodytes

3.55 × 107

1.07 × 109

1.03

3.20 × 107

9.59 × 108

0.97

Oryza sativa

3.09 × 107

9.26 × 108

0.89

2.90 × 107

8.71 × 108

0.89

Nicotiana tabacum

3.06 × 107

9.17 × 108

0.88

3.05 × 107

9.14 × 108

0.93

Solanum pennellii

2.72 × 107

8.16 × 108

0.79

2.60 × 107

7.80 × 108

0.79

Echinostoma caproni

2.50 × 107

7.50 × 108

0.72

2.50 × 107

7.50 × 108

0.76

Triticum aestivum

2.33 × 107

7.00 × 108

0.67

2.27 × 107

6.80 × 108

0.69

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BMC Bioinformatics

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