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Table 3 Classification results of metagenomics samples using SMART with the Genbank library

From: Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations

Sample

Total reads

Mammalian

Non-Mammalian

Unmatched

Ambiguous

Unique

 

N

n

%

n

%

n

%

n

%

Conjunctival 1

4,731,317

4,660,011

98.49

310

0.0066

1,627

0.034

69,369

1.50

Conjunctival 2

1,135,916

1,119,975

98.60

32

0.0028

173

0.015

15,736

1.38

Conjunctival 3

4,540,162

4,483,966

98.76

338

0.0074

1,332

0.029

54,476

1.20

Gut 1

2,439,314

102,982

4.22

176,810

7.25

661,399

27.11

1,498,123

61.42

Gut 2

760,562

37,461

4.93

65,144

8.57

218,409

28.72

439,548

57.79

Gut 3

2,326,530

54,012

2.32

160,774

6.91

868,078

37.31

1,243,666

53.46