Table 3 Benchmarking time consumption of GEM implementations on Emodel, Gmodel and GxEmodel by comparing normal R script in a public available dataset in standard laptop and HPC settings
Dataset: Teh et al., 1423 CpGs, 708,365 SNPs and 19 environments in a standard laptop | ||||
|---|---|---|---|---|
Method | Time cost on standard laptop | Time cost in HPC | Method | Time cost |
LM_Emodel | 95.1 s | GEM_Emodel | 18.9 s | |
LM_Gmodel | > = 60 days (a) | 3 h | GEM_Gmodel | 5.2 min |
LM_GxEmodel | > = 60 days (a) | 21 h | GEM_GxEmodel | 1.5 h |