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Table 3 Comparison of performance for selecting mitochondrial sequences (mt)

From: BAMQL: a query language for extracting reads from BAM files

  System User Wall Code
Tool time (s) time (s) time (s) (bytes)
BAMQL 3.65 133.86 150.28 86
C 3.80 126.28 138.16 1315
Perl 4.57 1704.05 1716.72 498
Python 4.06 299.33 313.68 507
SAMtools+AWK 14.56 455.12 240.96 170
Sambamba +AWK 6.53 185.64 99.56 112
  1. Best performer is highlighted in bold