Table 3 Comparison of performance for selecting mitochondrial sequences (mt)
From: BAMQL: a query language for extracting reads from BAM files
| Â | System | User | Wall | Code |
|---|---|---|---|---|
Tool | time (s) | time (s) | time (s) | (bytes) |
BAMQL | 3.65 | 133.86 | 150.28 | 86 |
C | 3.80 | 126.28 | 138.16 | 1315 |
Perl | 4.57 | 1704.05 | 1716.72 | 498 |
Python | 4.06 | 299.33 | 313.68 | 507 |
SAMtools+AWK | 14.56 | 455.12 | 240.96 | 170 |
Sambamba +AWK | 6.53 | 185.64 | 99.56 | 112 |