From: BAMQL: a query language for extracting reads from BAM files
 | System | User | Wall | Code |
---|---|---|---|---|
Tool | time (s) | time (s) | time (s) | (bytes) |
BAMQL | 3.55 | 109.16 | 115.69 | 54 |
C | 2.89 | 107.49 | 114.17 | 2590 |
Perl | 3.73 | 264.84 | 356.29 | 1667 |
Python | 4.24 | 137.06 | 171.77 | 1225 |
SAMtools+AWK | 41.42 | 2591.00 | 2322.19 | 831 |
Sambamba+AWK | 56.12 | 3446.93 | 3100.96 | 874 |