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Table 6 Comparison of performance for applying chain of filters to separate by chromosomes (chain)

From: BAMQL: a query language for extracting reads from BAM files

  System User Wall Code
Tool time (s) time (s) time (s) (bytes)
BAMQL 4.83 305.66 345.19 123
C 9.31 385.05 422.02 1027
Perl 11.18 2552.69 2585.88 800
Python 11.18 576.44 643.36 907
SAMtools 6.71 302.15 329.63 156
Sambamba 8.45 441.58 145.49 174
  1. Best performer is highlighted in bold