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Fig. 2 | BMC Bioinformatics

Fig. 2

From: General continuous-time Markov model of sequence evolution via insertions/deletions: local alignment probability computation

Fig. 2

Iterative solutions of integral equation system for local PWA probabilities. The results shown in this figure apply to both case (ii) and case (iii) local PWAs. In both panels, the abscissa is the number of sites between PASs (i.e., ∆L A for case (ii) and ∆L D for case (iii)), with zero corresponding to case (i). Each panel shows the ratio of the total contribution from histories with up to (and including) N ID indels to the “exact solution” of the multiplication factor. See section M1 of Methods for the parameter setting. Panel a is for 0.04 expected indels per site, and panel b is for 0.2 expected indels per site. Panels a and b in this figure are modified versions of panels B and C, respectively, of Figure 3 of [43]

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