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Fig. 5 | BMC Bioinformatics

Fig. 5

From: General continuous-time Markov model of sequence evolution via insertions/deletions: local alignment probability computation

Fig. 5

Perturbation analysis on local MSA probabilities in case (III). The graph shows the ratio of the contribution of the type (B) next-parsimonious history to that of the parsimonious history. The former history consists of a deletion along each of branches 2 and 3, and the latter consists of an insertion along branch 1. The ratio is shown as a function of the length of the gapped segment (∆L D1, abscissa) and the expected number of indels per site along each branch (different curves). The figure is a reduced and modified version of Figure 5 of [43]

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BMC Bioinformatics

ISSN: 1471-2105

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