Table 3 Speedup on columns with a specific coverage and % of dataset with the given coverage. Dataset is filtered for max coverage 28
From: PWHATSHAP: efficient haplotyping for future generation sequencing
col. cov. | % of dataset | Avg. time/col. (ms) | Speedup | |
|---|---|---|---|---|
| Â | Â | TSeq | TPar | Â |
16 | 2.0 % | 2.3 | 2.3 | 1.0 |
18 | 2.4 % | 9.0 | 9.0 | 1.0 |
20 | 2.5 % | 35.7 | 32.8 | 1.1 |
22 | 3.6 % | 153.1 | 41.4 | 3.6 |
24 | 3.2 % | 557.1 | 139.6 | 3.9 |
26 | 2.8 % | 2461.0 | 585.3 | 4.2 |
28 | 12.0 % | 9555.5 | 1175.5 | 5.3 |