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Table 1 Parameters used for cel and hsa miRNA-target predictions

From: MiRNATIP: a SOM-based miRNA-target interactions predictor

MiRNATIP parameters

Species

SOM training

Tail filtering

Free-energy filtering

 

Map size

α max

α min

offset

distance threshold

score threshold

C. elegans

30 ×30

0.95

0.1

3

0.7

–6 kcal/mol

Homo sapiens

65 ×65

0.85

0.1

3

0.7

–7 kcal/mol

  1. The first column reports the species, the next three columns contain parameters for SOM training (section “SOM training”). Forth and fifth columns report parameters for miRNA tail filtering process (section “Tail filtering”). Finally, the last column shows the free-energy threshold score (section “Free-energy filtering”)
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BMC Bioinformatics

ISSN: 1471-2105

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