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Table 1 Copy number aberration states defined in CloneCNA

From: CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data

Id Total copy number Major copy number Tumor genotypes Aberration type
1 0 0 N/A HOMD
2 1 1 A, B HEMD
3 2 1 AB NHET
4 2 2 AA, BB NLOH
5 3 2 AAB, ABB AHET
6 3 3 AAA, BBB ALOH
7 4 2 AABB AHET
8 4 3 AAAB, ABBB AHET
9 4 4 AAAA, BBBB ALOH
10 5 3 AAABB, AABBB AHET
11 5 4 AAAAB, ABBBB AHET
12 5 5 AAAAA, BBBBB ALOH
  1. Aberration types include homozygous deletion (HOMD), hemizygous deletion (HEMD), copy neutral heterozygosity (NHET), copy neutral LOH (NLOH), amplified heterozygosity (AHET) and amplified LOH (ALOH)