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Table 2 Tumor purity estimated by Control-FREEC, THetA, CloneCNA and ASCAT for TNBC samples

From: CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data

Sample

Control-FREEC

THetA

CloneCNA

ASCAT

SA018

0.78

0.67

0.61

0.63

SA029

0.84

0.6

0.44

0.48

SA030

0.87

0.51

0.44

0.47

SA031

0.26

0.51

0.36

0.41

SA051

0.3

0.5

0.38

0.44

SA052

0.84

0.62

0.84

0.51

SA065

0.96

0.49

0.66

0.67

SA069

0.55

0.5

0.41

0.42

SA071

0.94

0.63

0.66

0.72

MAE

0.24

0.09

0.07

N/A