Skip to main content

Table 2 Tumor purity estimated by Control-FREEC, THetA, CloneCNA and ASCAT for TNBC samples

From: CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data

Sample Control-FREEC THetA CloneCNA ASCAT
SA018 0.78 0.67 0.61 0.63
SA029 0.84 0.6 0.44 0.48
SA030 0.87 0.51 0.44 0.47
SA031 0.26 0.51 0.36 0.41
SA051 0.3 0.5 0.38 0.44
SA052 0.84 0.62 0.84 0.51
SA065 0.96 0.49 0.66 0.67
SA069 0.55 0.5 0.41 0.42
SA071 0.94 0.63 0.66 0.72
MAE 0.24 0.09 0.07 N/A