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Table 1 Artificial tumor samples. Coordinate list of the single nucleotide variants inserted in the artificial tumor samples and their variant allelic frequencies

From: Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data

Chromosome Position REF > ALT Artificial tumors variant allelic frequencies Normal variant allelic frequencies
0.02 – 0.26 0.5 – 0.86 0.97 – 1  
11 19854088 G > A 0.03 0.69 1.00 0
11 36484167 C > T 0.08 0.62 1.00 0.027
11 4608116 T > C 0.13 0.71 1.00 0.020
11 4661826 T > C 0.11 0.60 0.97 0.028
11 4673788 G > A 0.26 0.64 1.00 0.021
11 4928841 T > C 0.13 0.61 1.00 0
11 5372856 A > G 0.24 0.69 1.00 0.023
11 5373562 C > A 0.09 0.68 1.00 0.029
11 5443887 T > C 0.10 0.86 1.00 0
11 5443893 G > A 0.10 0.86 1.00 0
11 5462255 C > G 0.16 0.56 1.00 0
11 5906203 T > G 0.19 0.70 1.00 0
11 6519642 G > A 0.08 0.61 1.00 0
11 824789 T > C 0.11 0.63 1.00 0.026
12 25398281 C > T 0.12 0.63 1.00 0
12 75715330 C > A 0.13 0.60 1.00 0
22 24891418 A > C 0.21 0.70 1.00 0.030
22 44083442 T > C NA 0.78 1.00 0
13 101289801 C > A 0.13 0.65 1.00 0
20 61537337 G > T 0.13 0.65 1.00 0
17 48557299 G > T 0.11 0.74 1.00 0
5 45262378 G > T 0.08 0.50 1.00 0
1 94476902 T > C 0.15 0.65 1.00 0
2 110372199 G > T NA 0.57 1.00 0
5 64907465 C > A 0.10 0.57 1.00 0