BMC Bioinformatics

Table 1 Example of mapping results with multireads

From: A fuzzy method for RNA-Seq differential expression analysis in presence of multireads

Read ID	Reference ID	Identity	Coverage
read-1	gene-1	100	100
read-2	gene-1	100	100
read-2	gene-2	99	80
read-2	gene-3	95	80
read-3	gene-1	100	100
read-3	gene-2	100	100
read-4	gene-1	96	90
read-4	gene-2	97	90
read-4	gene-3	100	100
read-5	gene-1	95	80
read-5	gene-2	100	100

For gene-1: one uniquely mapping read (read-1); two reads having only gene-1 as best match (read-1, read-2); three reads having gene-1 as best match (read-1, read-2, read-3, the latter having also gene-2 as best match); five reads mapping on gene-1, even if not as best match (from read-1 to read-5)

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ISSN: 1471-2105

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