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Table 11 Induced ESR gene set: comparison between NEAT and LA+S (KEGG pathways)

From: NEAT: an efficient network enrichment analysis test

  

μ 0

log10 (p-value)

 

KEGG pathway

NEAT

LA+S

NEAT

LA+S

1

Starch and sucrose metabolism

394.2

400.6

<-300

<-300

2

Butanoate metabolism

84.8

98.0

–202.8

<-300

3

Pentose and glucuronate interconversions

110.7

127.5

–119.9

–185.7

4

beta-Alanine metabolism

104.0

122.9

–118.0

–209.8

5

Glycolysis/Gluconeogenesis

616.3

618.7

–116.5

–149.3

6

Fructose and mannose metabolism

200.0

206.2

–106.7

–160.7

7

Galactose metabolism

173.9

193.2

–104.5

–126.4

8

Glycerolipid metabolism

172.1

193.2

–72.7

–103.2

9

Longevity regulating pathway - multiple species

544.0

508.2

–70.6

–79.1

10

Pentose phosphate pathway

288.0

284.2

–64.0

–105.8

11

Amino sugar and nucleotide sugar metabolism

264.2

277.6

–63.4

–66.7

12

Peroxisome

313.3

332.9

–61.2

–55.8

13

Glutathione metabolism

204.8

221.6

–59.9

–77.8

14

Taurine and hypotaurine metabolism

24.3

28.5

–59.4

–92.8

15

Tyrosine metabolism

163.5

169.9

–51.8

–62.6

16

Tryptophan metabolism

113.3

130.9

–48.2

–59.4

17

Valine, leucine and isoleucine degradation

107.5

124.8

–45.3

–56.8

18

Other glycan degradation

11.7

12.9

–44.2

–66.3

19

Regulation of autophagy

126.7

135.2

–43.3

–45.5

20

Pyruvate metabolism

355.9

388.8

–42.8

–41.6

21

Alanine, aspartate and glutamate metabolism

262.2

284.5

–38.0

–36.7

22

Fatty acid degradation

215.0

225.0

–37.2

–43.7

23

Citrate cycle (TCA cycle)

267.3

299.5

–35.6

–32.9

24

Insulin resistance

172.8

176.5

–30.1

–30.4

25

Histidine metabolism

127.4

147.8

–28.8

–25.8

26

Arachidonic acid metabolism

36.7

44.1

–28.1

–40.6

27

Glyoxylate and dicarboxylate metabolism

201.6

224.8

–27.3

–23.7

28

Sphingolipid metabolism

103.6

116.3

–27.3

–26.2

29

Arginine and proline metabolism

154.3

180.2

–27.0

–24.8

30

Lysine degradation

150.4

160.2

–26.6

–31.5

31

Methane metabolism

254.2

262.7

–26.2

–23.7

32

Phenylalanine metabolism

71.4

81.5

–25.0

–26.4

33

Glycerophospholipid metabolism

270.9

285.1

–24.5

–22.3

34

Protein processing in endoplasmic reticulum

866.0

857.1

–17.4

–20.7

35

Ubiquinone and other terpenoid-quinone biosynthesis

41.8

47.1

–13.1

–12.3

36

Propanoate metabolism

107.3

122.9

–12.9

–9.9

37

alpha-Linolenic acid metabolism

27.1

30.5

–11.7

–11.2

38

Fatty acid elongation

75.3

76.1

–10.8

–12.9

39

Glycine, serine and threonine metabolism

264.3

281.1

–6.7

–3.5

40

Nicotinate and nicotinamide metabolism

99.8

111.9

–6.7

–4.7

41

Nitrogen metabolism

52.8

60.7

–5.4

–4.0

42

Thiamine metabolism

32.9

36.8

–4.1

–3.2

43

Selenocompound metabolism

89.3

97.0

–3.2

–1.9

44

Cysteine and methionine metabolism

285.3

310.6

–2.8

–1.0

45

Arginine biosynthesis

134.0

154.2

–2.4

–0.6

46

Sulfur metabolism

105.3

121.9

–2.2

–0.5

47

Biosynthesis of unsaturated fatty acids

103.9

102.1

–2.5

–3.1

48

Regulation of mitophagy - yeast

554.4

510.4

–1.6

–5.1

  1. The table reports the gene sets that are found to be over-enriched (α=1 %) by at least one of the two methods. μ 0 denotes the expected value of N AB in absence of enrichment. The last two columns report log 10 p-values for the proposed NEAT and the LA+S test of [19], respectively