Table 3 Twenty-three sequence-derived features
From: A genetic algorithm-based weighted ensemble method for predicting transposon-derived piRNAs
Index | Feature | Dimension | Parameter | Annotation |
|---|---|---|---|---|
F1 | 1-Spectrum Profile | 4 | No Parameters | Used in [20] |
F2 | 2-Spectrum Profile | 16 | No Parameters | Used in [20] |
F3 | 3-Spectrum Profile | 64 | No Parameters | Used in [20] |
F4 | 4-Spectrum Profile | 256 | No Parameters | Used in [20] |
F5 | 5-Spectrum Profile | 1024 | No Parameters | Used in [20] |
F6 | (3, m)-mismatch profile | 64 | m: the max mismatches | New features |
F7 | (4, m)-mismatch profile | 256 | m: the max mismatches | New features |
F8 | (5, m)-mismatch profile | 1024 | m: the max mismatches | New features |
F9 | (3, w)-subsequence profile | 64 | w: penalty for the non-contiguous matching | New features |
F10 | (4, w)-subsequence profile | 256 | w: penalty for the non-contiguous matching | New features |
F11 | (5, w)-subsequence profile | 1024 | w: penalty for the non-contiguous matching | New features |
F12 | 1-RevcKmer | 2 | No Parameters | New features |
F13 | 2-RevcKmer | 10 | No Parameters | New features |
F14 | 3-RevcKmer | 32 | No Parameters | New features |
F15 | 4-RevcKmer | 136 | No Parameters | New features |
F16 | 5-RevcKmer | 528 | No Parameters | New features |
F17 | PCPseDNC | 16 + λ | λ: the highest counted rank of the correlation | New features |
F18 | PCPseTNC | 64 + λ | λ: the highest counted rank of the correlation | New features |
F19 | SCPseDNC | 16 + 6 × λ | λ: the highest counted rank of the correlation | New features |
F20 | SCPseTNC | 64 + 12 × λ | λ: the highest counted rank of the correlation | New features |
F21 | Sparse Profile | 5 × d | d: the fixed length of sequences | New features |
F22 | PSSM | d | d: the fixed length of sequences | New features |
F23 | LSSTE | 32 | No parameters | Used in [21] |